If the pitting is only minor, it will be unsightly, but not affect the accuracy of items clamped to the table
(A pit 0.25" across is not going to misalign something like a milling vice. As long as it is a pit and protruding above the general surface ).
To clean up the table, just wrap some fine emery around a block of wood or steel and use it to polish the table until any it cleans up. Hopefully, you will not be removing even 0.00001", just removing any rust that stands above the surface, and then just lightly polishing. But, as Hopper says, polish all over; do not concentrate in one small area and produce a low spot.
An Apprentice who left his his tea cup, on a Surface table staining it was given this this task to remove the marks. Obviously this is for surface staining, if the are of pitting is large,and deep, you have to think min terms of milling or grinding to make the surface pristine again. This is not really a practicable process for the average home machinist, either in terms of equipment or skills, and will require the table to removed and taken to a professional machine shop.
Howard
Edited By Howard Lewis on 03/11/2022 06:31:10