I also had problems with alignment of my sx2p. this was detailed in my series in ME starting 17 Aug 2018 for cnc conversion. There were two main problems
1 the female dovetail column to head mounting block was twisted, I put this down to a green casting being machinedtoo soon. It rocked badly on the surface plate. A lot of scraping on the slide side taught it some manners and the front was machined back parallel.
2 still no joy, I found an adjustment on the column base bolts caused totally erratic changes in spindle alignment. On removal of the column, the seating in the base was terrible. Not flat, had been attacked with a very rough file and the oil marks showed only limited contact. One mounting base had a relief filed in the centre leaving high pads at the ends, while the other had oil marks which indicated poor contact with the column. Tighten a bolt with no support under it would cause the column to tilt, twist, lean etc. see pic 2 p 303. Solved by using shims to set Y base dovetails totally level and machined flat on the Bridgeport.
it was a lot of work, only done because I had done a lot of work in the machine obtained all the ball screws, machined all the x mountings drilled and tapped numerous holes etc so I could not send the machine back. (The articles do not show the chronological order in which the conversion was undertaken) In the end I ended up with only 0.02mm error on a 300mm long 15 mm sil steel bar in the spindle and to say the least I was very pleased with this!
The cnc mill has had a lot of work, and is extremely accurate. I am very pleased with it.