Welcome to the forum Alan.
> The Burnerd Model 30M 3 jaw chuck wont close and one of the jaws is out of alignment with the other 2
Undo the jaws while pushing the one (or two) that won't go all the way to the middle in. You will feel it/them click in to place, now wind them back in keeping the pressure on until they are all being pulled in by the scroll. You should now be sorted.
Aside from 3 which sounds like a poorly adjusted cross-slide screw or loose feed nut, 2 and 4 probably aren't issues – backlash in the motor drive is no issue (unless its a symptom of a deeper fault) and apron handwheel feeds usually have a fair degree of backlash. But someone more familiar with Myfords will be along in a moment.
Neil