Can be a lot of work but producing your own function based wiring diagram of the troublesome bits is a great help in figuring things out. Something akin to sort of thing that workshop manuals on more modern cars do.
So, assuming you have a wiring diagram appropriate to the original machine, make your own drawings of all the wires, switches, contactors et al going to the troublesome parts right back to the main power on contactor. Usually with far less of a maze to trace it becomes fairly clear where the problems must lie. Separate one for each problem area. If you don’t have a wiring CAD program scan and print your drawing once done to produce scribble copies that can be binned after making notes if you don’t get it right first time.
Given the fairly extensive modifications you have made you may have to repeat the exercise following your actual wiring. Comparing the two should pin point the issue.
My experience is that creating a functional drawing from the relevant parts of the original diagram is sufficient for the error to be discerned. Don’t try and short cut tho’ as it’s possible to jump to erroneous conclusions part way through drawing. How do I know.
Clive