Now we know the reason, there is a known fix. However, that thread is
not an important part of the chuck alignment with the spindle. It only serves as a means of pulling the chuck onto reference surfaces or for pulling it away from those locating surfaces.
That means the thread fit is not the location item and the slight difference of the thread angles may be made worse as the chuck seats on its location surfaces (especially if one of those locating surfaces has any very slight imperfection(roughness)), if that thread is already tight. Slacking off the thread fit, therefore, does not need to be as precise as one might initially think.
My lathe has a zero tolerance diametral fit at the back of the spindle nose, where the additional item is located onto a radial face. There is another close-fitting diameter at the spindle nose, but with a thou difference between spindle and fitting. Many consider that the front fitting provides nothing towards the chuck alignment whatsoever.
Edited to say sorry for the lack of paragraphs. I put them in, but on posting they disappear. Same as the incorrect forced line change, which was not in my draft and only appears when posting (so I cannot correct these shortcomings).
Edited By not done it yet on 21/06/2016 10:51:35