I've just dismantled my spindle, and reassembled it, with no problems. As said above, there are drawings and instructions in the Files section of the Yahoo Boxford discussion board, which were invaluable for me.
Best to use a couple of C spanners for the locknuts on the back end of the spindle. Also you'll have to dismantle the sliding gear lever first so you can take out the bronze key which fits in the groove on the bull wheel. I tapped mine out using a lead block (tap the back so the shaft comes out towards the tailstock) and have some clean rag to spread over the ways to lay the shaft on when it comes out. You need several pairs of hands to catch the bits inside the headstock as they come off the shaft. Some suggest a length of threaded studding and big washers to draw the shaft out rather than tapping it.
My reason for removing the shaft was to get rid of all the old dried grease in the bearings, and to fit a decent vee belt instead of the horrible link belt that someone else had previously fitted. Re-assembly was ok, except that it was difficult on mine to get the sliding gear lever assembly – I used a dollop of grease to stick the bronze key in position and had to carefully 'feel' the pin on the shaft into its' hole in the key. Setting the pre-load on the bearings with a bit of string and a spring balance was hit and miss – just a case of fiddling until it feels right, and checking again over the subsequent few days of running.