Hello Karl,
The difference you state may just be a perfectly normal variation on the lower part of the bearing housings, I can't imagine they were halved with greater precision.
If you have a test bar you trust with a 2 Morse taper fitting, fit it in the spindle socket and take accurate measurement down from that to the bed. That will tell you if the spindle droops or climbs relative to the bed, and by how much.
The test has to assume the bed isn't severely hollowed from use of course, in which case you may have to work off a good quality straight edge instead, with that bridging over the worn section of the bed.
Regards
Brian