Often a small plate is fixed at each end of the fittings that can screw on before the nut on a small scale one. These plates are drilled in teh corners and threaded rods sliped through teh holes and retained with a small nut each end. On full size or larger models the plates clamp onto thhe nuts with a grub screw and have slots in them to take pieces of toughened glass, like these
Other options are to fit a square or round brass tube that the glass can fit inside and then mill a slot into the side so you can see the water level