It really comes down to the surface you measure from or the angle of the part in relation to the cutter.
For a triangle with one corner at 90degrees, the other two angles must also add up to 90. If one know one angle in this case your measured 50degrees then the remaining angle is called the complementry angle so 90-50 =40.
You can see here I have drawn out the triangle, the long hypotinuse is 100mm as per your sin bar and angled at 50deg. The measuring box is measuring the angle between the two black lines and shows 40deg

It probably comes down to measuring the angle from a horizontal surface but setting it up in the mill with a vertical cutting edge.
Another time this often crops up is where people try thread cutting and set the topslide to 29.5 deg from the lateh axis when it should be 29.5 degrees from a line at right angle sto it so the angle scale on teh topslide should really show the complementry angle of 60.5deg (90-29.5 = 60.5)