There are various things to consider with the brakes;
There is not room to fit the Super Simplex brakes to the front wheels as the cylinders get in the way.
If you have fitted the double acting axle pump there isn't room to fit the centre crossbeam.
There are a number of options. You can modify the cylinders to make room for the front brakes, you can fit the front brakes to the rear of the wheels with a reversing arrangement for the operating levers, or you can leave the front brakes off. In practice just braking on four wheels shouldn't be any different from braking all six as they are coupled anyway and the force you apply from the operating mechanism is distributed to four rather than six brakes.
If you have the double acting pump you will have to redesign the beam to avoid the forward inlet.
Regarding the drain cocks; why not just use automatic ones? For manual operation a novel idea is shown on Dr-John's site here. His site has an excellent build thread on the Simplex.
Russell.